Q-Exactive Plus Biopharma- High Resolution Orbitrap Liquid Chromatograph Mass Spectrometer

External users: registration to be carried out only through I-STEM portal
Additional information about sample and analysis details should be filled in the pdf form provided in the I-STEM portal under “DOWNLOAD CSRF”

Internal users (IITB): registration to be carried out only through DRONA portal
Additional information about sample and analysis details should be filled in the pdf form provided here.

Make
Thermo Fisher Scientific India Pvt. Ltd.
Model
Q-Exactive Plus Biopharma-High Resolution Orbitrap
Facility Status
Working
Date of Installation
Facility Management Division
Sophisticated Analytical Instrument Facility (SAIF)

.

Category

  • Chromatography » Liquid Chromatography
  • Spectroscopy and Spectrometry » Mass Spectrometry

Booking Details

Booking available for
Internal and External Both

Facility Management Team and Location

Facility In Charge
Dr. Nutan Agadi
Co-convenors
Dr. Nutan Agadi, nmagadi@iitb.ac.in, 022- 21596851
Facility Manager
Dr. Nutan Agadi, nmagadi@iitb.ac.in, 022- 21596851
Facility Operator
Dr. Manali Jadhav ,manaliv@iitb.ac.in ,022- 21596874
Pradnya Nikam ,pradnyaj@iitb.ac.in ,022-21596873
Department
Centre for Research in Nanotechnology and Science (CRNTS)
Lab Email ID
manaliv@iitb.ac.in, pradnyaj@iitb.ac.in
Facility Location
Gr. Floor Room No 112 A, SAIF/CSIF, IIT Bombay
Lab Phone No
022-21596874

Facility Features, Working Principle and Specifications

Features Working Principle

Specifications: 

  • Vanquish UHPLC for small molecules & Nano-HPLC for large molecules
  • Direct Infusion Mass with ESI & APCI (Positive & Negative mode ionization)
  • Quaternary UHPLC with Variable Wavelength Detector Mass Spectrometer
  • Nano HPLC (Micro fluidic column) - Mass spectrometer

Unique Features of the Q-Exactive Plus: 

  • Characterize, quantify and confirm with unmatched confidence using the Q-Exactive Plus mass spectrometer.
  • Advanced Quadrupole technology featuring Thermo Fisher segmented HyperQuad.
  • Resolving power up to 280,000.
  • Maximum scan speed 12 Hz.
  • Spectral multiplexing for enhanced duty cycle.
  • RF-Lens ion source for increased sensitivity.
  • Advanced Active Beam Guide intelligent ion beam management for high flux ion sources.
  • Intact Protein Mode option for characterizing intact proteins with ease.
  • Enhanced Resolution Option maximizing resolution at 280,000.

Working Principle 

The Orbitrap is an ion trap mass analyzer consisting of two outer electrodes and a central electrode, which enable it to act as both an analyzer and detector. Ions entering the Orbitrap are captured through "electrodynamic squeezing." Once captured, ions oscillate around the central electrode and between the two outer electrodes at different frequencies, depending on their mass-to-charge ratios. This oscillation separates the ions. By measuring these oscillation frequencies induced by ions on the outer electrodes, the mass spectra of the ions are acquired using image current detection.

Liquid Chromatography / Mass Spectrometry (LC/MS) combines high-performance liquid chromatography (HPLC) for separation with mass spectrometry for analysis and detection. It utilizes two common atmospheric pressure ionization (API) processes: Electrospray Ionization (ESI) and Atmospheric Pressure Chemical Ionization (APCI), both of which are soft ionization techniques.

The Q Exactive Plus mass spectrometer provides fast, sensitive, reliable, and confident detection and identification of compounds in complex mixtures while maintaining full compatibility with UHPLC and fast chromatography. The HCD collision cell enhances functionality by providing ion fragmentation while preserving high resolution, accurate mass, and high sensitivity.

Main Features of Instrument 

  • Mass Range (m/z): 50-8000 amu
  • Resolution: 140,000 @ m/z 200 (280,000 with Enhanced Resolution mode option)
  • High Mass Accuracy (Typically less than 1 ppm)
  • High Sensitivity (500 fg of Buspirone, S/N 100:1)
  • Ionization Method:
    • API:
      1. HESI positive & negative
      2. APCI positive & negative
  • Direct Infusion for Mass Analysis (MS, MS/MS)
  • Binary Nano HP-LC system with Mass as detector
  • Quaternary UHPLC with Variable Wavelength Detector Mass Spectrometer

Sample Preparation, User Instructions and Precautionary Measures

Instruction for Sample Preparation
  • Expected structure or mass can be provided.
  • Solvent for mobile phase should be mentioned or solubility of compound in volatile solvent.
  • As HP-LC is available in most departments, LC of submitted samples indicating the operation should be supplied along with the sample.
  • Currently, C8, C18 & others like cyano, amino, Si columns are available. You can submit the interest for separation or repeatability of HP-LC run.
  • For HPLC-UV analysis, the wavelength should be given.
  • Protein samples should be properly digested and desalted.
  • Source of the protein should be mentioned.
  • MS-DS (Material Safety Data Sheet) should be given along with samples.
  • Samples should not be toxic or hazardous. Samples will not be accepted unless MS-DS is given.

Software Details: 

  • Thermo Proteome Discoverer 2.2 & 2.5 for Protein identification
  • Thermo Compound Discoverer 3.2 for Metabolite identification
  • BioPharma Finder Software 2.0 (for intact mass identification, protein deconvolution and peptide mapping)
  • Protein Deconvolution software
  • Chromelon 7.0 Software for UHPLC
  • Compound Discover 2.0 and MF 7.0 SR3 software for Metabolomics
  • LipidSearch Software 4.2.29 for Lipidomics identification
User Instructions and Precautionary Measures

Kindly download the Material Safety Data Sheet (MSDS) using the link provided:

Download MSDS 

 

 

Charges for Analytical Services in Different Categories

Usage Charges

HR-LCMS Orbitrap Charges at IIT Bombay

HR-LCMS Orbitrap Charges at IIT Bombay (Excludes GST) 

 

For Small molecules:

 

 

IITB User

University

National Lab/R&D's;

Sine (Letter from SINE required); 

Research Park (MSME) (Letter from RP required)

Start Up

Industry

ONLY HRMS

650

1300

3250

4875

6500

HRMS+COPMPOUND FORMULA

685

1725

4325

6488

8650

LCMS with library (Plant extract Impurity Profiling Metabolite Identification or Degradation studies or Environmental samples)

1450

2900

7250

10875

14500

      

 

 

 

 

 

 

 

For large molecules like Proteins:

 

 

 

 

 

IITB User

University

National Lab/R&D's;

Sine (Letter from SINE required); 

Research Park (MSME) (Letter from RP required)

Start Up

Industry

Protein Identification (for 1-hour)

1450

2900

7250

10875

14500

Protein Identification (for 2-hours)

2900

5800

14500

21750

29000

Sample Preparation (In-gel or In-solution Trypsin Digestion with Desalting)

650/-

1300

3250

4875

6500

Only desalting of digested protein samples

460

920

2300

6900

4600

      

 

     

For Lipidomics

 

 

IITB User

University

National Lab/R&D's;

Sine (Letter from SINE required); 

Research Park (MSME) (Letter from RP required)

Start Up

Industry

Qualitative and Quantitative Lipids Identification

1450

2900

7250

10875

14500

 

     

For Intact Mass:

 

 

IITB User

University

National Lab/R&D's;

Sine (Letter from SINE required); 

Research Park (MSME) (Letter from RP required)

Start Up

Industry

Intact Mass of Proteins Peptides and Oligonucleotides

1600

3220

8050

12000

16000

 

 

 

 

 

 

 

 

 

 

 

  

 

Applications

  • Quantitative identification of Nitrosamine impurities
  • "Proteomics" - Qualitative and Quantitative Proteomics identification
  • "Metabolomics" - Metabolite identification from natural extracts (like plants, fruits, etc.)
  • Metabolite identification from environmental samples
  • "Lipidomics" - Qualitative and Quantitative Lipids Identification
  • Intact mass identification & Peptide mapping
  • Impurity Profiling
  • Degradation studies
  • Pharmacokinetics

Sample Details

SOP, Lab Policies and Other Details

Publications