Q-Exactive Plus Biopharma- High Resolution Orbitrap Liquid Chromatograph Mass Spectrometer
Q-Exactive Plus Biopharma- High Resolution Orbitrap Liquid Chromatograph Mass Spectrometer
Make
Thermo Fiseher Scientific Pte. Ltd.
Model
Q-Exactive Plus Biopharma-High Resolution Orbitrap
Facility Status
Working
Date of Installation
Facility Management Division
Sophisticated Analytical Instrument Facility (SAIF)

Category

  • Chromatography » Liquid Chromatography
  • Spectroscopy and Spectrometry » Mass Spectrometry

Booking Details

Booking available for
Internal and External Both

Facility Management Team and Location

Faculty In Charge
Prof. Suparna Mukherji
head.saif@iitb.ac.in
office.saif@iitb.ac.in
0091-22- 2576 7691/2
Facility Manager
Dr. Mayuri gandhi
mngandhi@iitb.ac.in
022- 2576 8692
Co-convenors
  • Mr. A. Naresh, Senior Technical Officer, SAIF
    Email: naresh.ambati@iitb.ac.in
  • Dr. Nutan Agadi, Technical Officer, SAIF
    Email: nmagadi@iitb.ac.in
  • Dr. Bharati Patro, Technical Officer, SAIF
    Email: bharati@iitb.ac.in
  • LAB Email ID
    pradnyaj@iitb.ac.in, manaliv@iitb.ac.in
    Facility Location
    Gr. Floor Room No 112 A, CRNTS/SAIF, IIT Bombay
    Lab Phone No
    022-21596874

    Facility Features, Working Principle and Specifications

    Features Working Principle

    Specifications: 

    • Vanquish UHPLC for small molecules & Nano-HPLC for large molecules
    • Direct Infusion Mass with ESI & APCI (Positive & Negative mode ionization)
    • Quaternary UHPLC with Variable Wavelength Detector Mass Spectrometer
    • Nano HPLC (Micro fluidic column) - Mass spectrometer

    Unique Features of the Q-Exactive Plus: 

    • Characterize, quantify and confirm with unmatched confidence using the Q-Exactive Plus mass spectrometer.
    • Advanced Quadrupole technology featuring Thermo Fisher segmented HyperQuad.
    • Resolving power up to 280,000.
    • Maximum scan speed 12 Hz.
    • Spectral multiplexing for enhanced duty cycle.
    • RF-Lens ion source for increased sensitivity.
    • Advanced Active Beam Guide intelligent ion beam management for high flux ion sources.
    • Intact Protein Mode option for characterizing intact proteins with ease.
    • Enhanced Resolution Option maximizing resolution at 280,000.

    Working Principle 

    The Orbitrap is an ion trap mass analyzer consisting of two outer electrodes and a central electrode, which enable it to act as both an analyzer and detector. Ions entering the Orbitrap are captured through "electrodynamic squeezing." Once captured, ions oscillate around the central electrode and between the two outer electrodes at different frequencies, depending on their mass-to-charge ratios. This oscillation separates the ions. By measuring these oscillation frequencies induced by ions on the outer electrodes, the mass spectra of the ions are acquired using image current detection.

    Liquid Chromatography / Mass Spectrometry (LC/MS) combines high-performance liquid chromatography (HPLC) for separation with mass spectrometry for analysis and detection. It utilizes two common atmospheric pressure ionization (API) processes: Electrospray Ionization (ESI) and Atmospheric Pressure Chemical Ionization (APCI), both of which are soft ionization techniques.

    The Q Exactive Plus mass spectrometer provides fast, sensitive, reliable, and confident detection and identification of compounds in complex mixtures while maintaining full compatibility with UHPLC and fast chromatography. The HCD collision cell enhances functionality by providing ion fragmentation while preserving high resolution, accurate mass, and high sensitivity.

    Main Features of Instrument 

    • Mass Range (m/z): 50-8000 amu
    • Resolution: 140,000 @ m/z 200 (280,000 with Enhanced Resolution mode option)
    • High Mass Accuracy (Typically less than 1 ppm)
    • High Sensitivity (500 fg of Buspirone, S/N 100:1)
    • Ionization Method:
      • API:
        1. HESI positive & negative
        2. APCI positive & negative
    • Direct Infusion for Mass Analysis (MS, MS/MS)
    • Binary Nano HP-LC system with Mass as detector
    • Quaternary UHPLC with Variable Wavelength Detector Mass Spectrometer

    Instructions for Registration, Sample Preparation, User Instructions, Precautionary Measures and Charges

    Instructions for Registration

    Kindly refer to the SAIF site for instruction for registration

    Instruction for Sample Preparation
    • Expected structure or mass can be provided.
    • Solvent for mobile phase should be mentioned or solubility of compound in volatile solvent.
    • As HP-LC is available in most departments, LC of submitted samples indicating the operation should be supplied along with the sample.
    • Currently, C8, C18 & others like cyano, amino, Si columns are available. You can submit the interest for separation or repeatability of HP-LC run.
    • For HPLC-UV analysis, the wavelength should be given.
    • Protein samples should be properly digested and desalted.
    • Source of the protein should be mentioned.
    • MS-DS (Material Safety Data Sheet) should be given along with samples.
    • Samples should not be toxic or hazardous. Samples will not be accepted unless MS-DS is given.

    Software Details: 

    • Thermo Proteome Discoverer 2.2 & 2.5 for Protein identification
    • Thermo Compound Discoverer 3.2 for Metabolite identification
    • BioPharma Finder Software 2.0 (for intact mass identification, protein deconvolution and peptide mapping)
    • Protein Deconvolution software
    • Chromelon 7.0 Software for UHPLC
    • Compound Discover 2.0 and MF 7.0 SR3 software for Metabolomics
    • LipidSearch Software 4.2.29 for Lipidomics identification
    User Instructions and Precautionary Measures

    Kindly download the Material Safety Data Sheet (MSDS) using the link provided:

    Download MSDS 

    HR-LCMS Orbitrap Charges at IIT Bombay

     

    HR-LCMS Orbitrap Charges at IIT Bombay (Excludes GST) 

    Small Molecules  

    Service DescriptionIndustryUniversityNational Lab/R&D'sIIT Bombay User's charges
    Only HRMS6500/-1300/-3250/-650/- (Per Sample)
    HRMS + compound formula & library search8650/-1725/-4325/-865/- (Per Sample)
    LCMS with database (Plant extract, Impurity Profiling, etc.)14500/-2900/-7250/-1450/- (Per Sample)

    Large Molecules (Proteins) 

    Service DescriptionIndustryUniversityNational Lab/R&D'sIIT Bombay User's charges
    Protein Identification (1-hour)14500/-2900/-7250/-1450/- (Per hour)
    Protein Identification (2-hours)29000/-5800/-14500/-2900/- (Per hour)
    Sample Preparation (In-gel or In-solution Trypsin Digestion)6500/-1300/-3250/-650/- (Per Sample)
    Only Desalting of digested protein samples4600/-920/-2300/-460/- (Per Sample)

    Lipidomics 

    Service DescriptionIndustryUniversityNational Lab/R&D'sIIT Bombay User's charges
    Qualitative and Quantitative Lipids Identification14400/-2875/-7200/-1440/- (Per hour)

    Intact Mass 

    Service DescriptionIndustryUniversityNational Lab/R&D'sIIT Bombay User's charges
    Intact Mass of Proteins, Peptides, and Oligonucleotides16000/-3220/-8050/-1600/- (Per sample)

    Applications

    • Quantitative identification of Nitrosamine impurities
    • "Proteomics" - Qualitative and Quantitative Proteomics identification
    • "Metabolomics" - Metabolite identification from natural extracts (like plants, fruits, etc.)
    • Metabolite identification from environmental samples
    • "Lipidomics" - Qualitative and Quantitative Lipids Identification
    • Intact mass identification & Peptide mapping
    • Impurity Profiling
    • Degradation studies
    • Pharmacokinetics

    Sample Details

    SOP, Lab Policies and Other Details

    Publications

    Publications
    NA