Category
- Chromatography » Liquid Chromatography
- Spectroscopy and Spectrometry » Mass Spectrometry
Booking Details
Facility Management Team and Location
head.saif@iitb.ac.in
office.saif@iitb.ac.in
0091-22- 2576 7691/2
mngandhi@iitb.ac.in
022- 2576 8692
- Dr. Mayuri Gandhi, Research Scientist, SAIF
Email: mngandhi@iitb.ac.in - Dr. Gajender Saini, Senior Technical Officer, SAIF
Email: gsaini@iitb.ac.in
Email: naresh.ambati@iitb.ac.in
Email: nmagadi@iitb.ac.in
Email: bharati@iitb.ac.in
Facility Features, Working Principle and Specifications
Specifications:
- Vanquish UHPLC for small molecules & Nano-HPLC for large molecules
- Direct Infusion Mass with ESI & APCI (Positive & Negative mode ionization)
- Quaternary UHPLC with Variable Wavelength Detector Mass Spectrometer
- Nano HPLC (Micro fluidic column) - Mass spectrometer
Unique Features of the Q-Exactive Plus:
- Characterize, quantify and confirm with unmatched confidence using the Q-Exactive Plus mass spectrometer.
- Advanced Quadrupole technology featuring Thermo Fisher segmented HyperQuad.
- Resolving power up to 280,000.
- Maximum scan speed 12 Hz.
- Spectral multiplexing for enhanced duty cycle.
- RF-Lens ion source for increased sensitivity.
- Advanced Active Beam Guide intelligent ion beam management for high flux ion sources.
- Intact Protein Mode option for characterizing intact proteins with ease.
- Enhanced Resolution Option maximizing resolution at 280,000.
Working Principle
The Orbitrap is an ion trap mass analyzer consisting of two outer electrodes and a central electrode, which enable it to act as both an analyzer and detector. Ions entering the Orbitrap are captured through "electrodynamic squeezing." Once captured, ions oscillate around the central electrode and between the two outer electrodes at different frequencies, depending on their mass-to-charge ratios. This oscillation separates the ions. By measuring these oscillation frequencies induced by ions on the outer electrodes, the mass spectra of the ions are acquired using image current detection.
Liquid Chromatography / Mass Spectrometry (LC/MS) combines high-performance liquid chromatography (HPLC) for separation with mass spectrometry for analysis and detection. It utilizes two common atmospheric pressure ionization (API) processes: Electrospray Ionization (ESI) and Atmospheric Pressure Chemical Ionization (APCI), both of which are soft ionization techniques.
The Q Exactive Plus mass spectrometer provides fast, sensitive, reliable, and confident detection and identification of compounds in complex mixtures while maintaining full compatibility with UHPLC and fast chromatography. The HCD collision cell enhances functionality by providing ion fragmentation while preserving high resolution, accurate mass, and high sensitivity.
Main Features of Instrument
- Mass Range (m/z): 50-8000 amu
- Resolution: 140,000 @ m/z 200 (280,000 with Enhanced Resolution mode option)
- High Mass Accuracy (Typically less than 1 ppm)
- High Sensitivity (500 fg of Buspirone, S/N 100:1)
- Ionization Method:
- API:
- HESI positive & negative
- APCI positive & negative
- API:
- Direct Infusion for Mass Analysis (MS, MS/MS)
- Binary Nano HP-LC system with Mass as detector
- Quaternary UHPLC with Variable Wavelength Detector Mass Spectrometer
Instructions for Registration, Sample Preparation, User Instructions, Precautionary Measures and Charges
Kindly refer to the SAIF site for instruction for registration
- Expected structure or mass can be provided.
- Solvent for mobile phase should be mentioned or solubility of compound in volatile solvent.
- As HP-LC is available in most departments, LC of submitted samples indicating the operation should be supplied along with the sample.
- Currently, C8, C18 & others like cyano, amino, Si columns are available. You can submit the interest for separation or repeatability of HP-LC run.
- For HPLC-UV analysis, the wavelength should be given.
- Protein samples should be properly digested and desalted.
- Source of the protein should be mentioned.
- MS-DS (Material Safety Data Sheet) should be given along with samples.
- Samples should not be toxic or hazardous. Samples will not be accepted unless MS-DS is given.
Software Details:
- Thermo Proteome Discoverer 2.2 & 2.5 for Protein identification
- Thermo Compound Discoverer 3.2 for Metabolite identification
- BioPharma Finder Software 2.0 (for intact mass identification, protein deconvolution and peptide mapping)
- Protein Deconvolution software
- Chromelon 7.0 Software for UHPLC
- Compound Discover 2.0 and MF 7.0 SR3 software for Metabolomics
- LipidSearch Software 4.2.29 for Lipidomics identification
Kindly download the Material Safety Data Sheet (MSDS) using the link provided:
HR-LCMS Orbitrap Charges at IIT Bombay
HR-LCMS Orbitrap Charges at IIT Bombay (Excludes GST)
Small Molecules
Service Description | Industry | University | National Lab/R&D's | IIT Bombay User's charges |
---|---|---|---|---|
Only HRMS | 6500/- | 1300/- | 3250/- | 650/- (Per Sample) |
HRMS + compound formula & library search | 8650/- | 1725/- | 4325/- | 865/- (Per Sample) |
LCMS with database (Plant extract, Impurity Profiling, etc.) | 14500/- | 2900/- | 7250/- | 1450/- (Per Sample) |
Large Molecules (Proteins)
Service Description | Industry | University | National Lab/R&D's | IIT Bombay User's charges |
---|---|---|---|---|
Protein Identification (1-hour) | 14500/- | 2900/- | 7250/- | 1450/- (Per hour) |
Protein Identification (2-hours) | 29000/- | 5800/- | 14500/- | 2900/- (Per hour) |
Sample Preparation (In-gel or In-solution Trypsin Digestion) | 6500/- | 1300/- | 3250/- | 650/- (Per Sample) |
Only Desalting of digested protein samples | 4600/- | 920/- | 2300/- | 460/- (Per Sample) |
Lipidomics
Service Description | Industry | University | National Lab/R&D's | IIT Bombay User's charges |
---|---|---|---|---|
Qualitative and Quantitative Lipids Identification | 14400/- | 2875/- | 7200/- | 1440/- (Per hour) |
Intact Mass
Service Description | Industry | University | National Lab/R&D's | IIT Bombay User's charges |
---|---|---|---|---|
Intact Mass of Proteins, Peptides, and Oligonucleotides | 16000/- | 3220/- | 8050/- | 1600/- (Per sample) |
Applications
- Quantitative identification of Nitrosamine impurities
- "Proteomics" - Qualitative and Quantitative Proteomics identification
- "Metabolomics" - Metabolite identification from natural extracts (like plants, fruits, etc.)
- Metabolite identification from environmental samples
- "Lipidomics" - Qualitative and Quantitative Lipids Identification
- Intact mass identification & Peptide mapping
- Impurity Profiling
- Degradation studies
- Pharmacokinetics